Compare Gene Expressions from 2-Treatment RNA-Seq Experiments

[Up] [Top]

Documentation for package ‘AMAP.Seq’ version 1.0

Help Pages

map-package Internal functions/data for AMAP.Seq package
counts Internal functions/data for AMAP.Seq package
decom.initial Internal functions/data for AMAP.Seq package
del.true Internal functions/data for AMAP.Seq package
dispersion.nb.QL Internal functions/data for AMAP.Seq package
dispersion.nb.shrink Internal functions/data for AMAP.Seq package
dist.CvM2D Internal functions/data for AMAP.Seq package
est.mu.nb.mle Internal functions/data for AMAP.Seq package
est.v.nb.QL Internal functions/data for AMAP.Seq package
EXP.part.nbinom Internal functions/data for AMAP.Seq package
EXP.part.poisson Internal functions/data for AMAP.Seq package
EXP.step Internal functions/data for AMAP.Seq package
initial.uv Internal functions/data for AMAP.Seq package
int.nbinom.prior Internal functions/data for AMAP.Seq package
LogSum Internal functions/data for AMAP.Seq package
MAX.step Internal functions/data for AMAP.Seq package
MGN.EM Estimate the mixture gamma-normal (MGN) distribution using expectation-maximization (EM) algorithm
nb.lglk Internal functions/data for AMAP.Seq package
Norm.GMedian Internal functions/data for AMAP.Seq package
pdf2cdf Internal functions/data for AMAP.Seq package
pdf2grid Internal functions/data for AMAP.Seq package
posterior.uv Internal functions/data for AMAP.Seq package
posterior.uv.one Internal functions/data for AMAP.Seq package
prior.est Internal functions/data for AMAP.Seq package
prior.grid Internal functions/data for AMAP.Seq package
RNASeq.Data Standardize the data from RNA-seq experiment
RNASeq.Data.Gene Internal functions/data for AMAP.Seq package
test.AMAP Calculate the test statistics of the AMAP tests
test.amap.as Internal functions/data for AMAP.Seq package
test.amap.gene Internal functions/data for AMAP.Seq package