ReporterScore-package	ReporterScore-package
%>%	pipe
as.enrich_res	KO_enrich
cm_test_k	c_means
combine_rs_res	combine_rs_res
Compound_htable	Compound_htable
CPDlist	CPDlist
custom_modulelist	custom_modulelist
custom_modulelist_from_org	custom_modulelist_from_org
c_means	c_means
c_net_from_pathway_xml	c_net_from_pathway_xml
download_org_pathway	update_KEGG
export_report_table	export_report_table
extract_cluster	RSA_by_cm
gene2ko	gene2ko
genedf	genedf
get_all_pathway_net_index	get_all_pathway_net_index
get_features	get_features
get_KOs	get_features
get_org_pathway	update_KEGG
get_reporter_score	get_reporter_score
GOlist	GOlist
GRSA	reporter_score
GRSA_by_cm	RSA_by_cm
hsa_kegg_pathway	hsa_kegg_pathway
ko.test	ko.test
KOlist	KOlist
KO_abundance	KO_abundance
KO_enrich	KO_enrich
KO_fisher	KO_fisher
KO_gsa	KO_gsa
KO_gsea	KO_gsea
KO_gsva	KO_gsva
KO_htable	KO_htable
KO_padog	KO_padog
KO_safe	KO_safe
KO_sea	KO_sea
load_CARDinfo	load_CARDinfo
load_CAZy_info	load_CAZy_info
load_Compound_htable	load_htable
load_CPDlist	load_htable
load_Enzyme_htable	load_htable
load_Enzyme_info	load_Enzyme_info
load_GOinfo	load_GOlist
load_GOlist	load_GOlist
load_htable	load_htable
load_KOlist	load_htable
load_KO_desc	load_htable
load_KO_htable	load_htable
load_Module_htable	load_htable
load_org_pathway	load_htable
load_Pathway_htable	load_htable
load_pathway_xml_ls	load_pathway_xml_ls
metadata	KO_abundance
mmu_kegg_pathway	mmu_kegg_pathway
modify_description	modify_description
Module_htable	Module_htable
parse_enzyme_dat	parse_enzyme_dat
Pathway_htable	Pathway_htable
pathway_net_index	pathway_net_index
plot.cm_res	plot.cm_res
plot.enrich_res	plot_enrich_res
plot_c_means	RSA_by_cm
plot_enrich_res	plot_enrich_res
plot_features_box	plot_features_box
plot_features_distribution	plot_features_distribution
plot_features_heatmap	plot_features_heatmap
plot_features_in_pathway	plot_features_in_pathway
plot_features_network	plot_features_network
plot_htable	plot_htable
plot_KEGG_map	plot_KEGG_map
plot_KOs_box	plot_features_box
plot_KOs_distribution	plot_features_distribution
plot_KOs_heatmap	plot_features_heatmap
plot_KOs_in_pathway	plot_features_in_pathway
plot_KOs_network	plot_features_network
plot_pathway_net	plot_pathway_net
plot_report	plot_report
plot_report_bar	plot_report
plot_report_circle_packing	plot_report_circle_packing
plot_significance	plot_significance
print.reporter_score	print.reporter_score
print.rs_by_cm	print.rs_by_cm
pvalue2zs	pvalue2zs
ReporterScore	ReporterScore-package
reporter_score	reporter_score
reporter_score_res	reporter_score_res
reporter_score_res2	reporter_score_res
RSA	reporter_score
RSA_by_cm	RSA_by_cm
transform_modulelist	custom_modulelist
update_CARDinfo	update_CARDinfo
update_CAZy_info	update_CAZy_info
update_Enzyme_info	update_Enzyme_info
update_GOinfo	update_GOlist
update_GOlist	update_GOlist
update_htable	update_KEGG
update_KEGG	update_KEGG
update_KO_file	update_KEGG
update_org_pathway	update_KEGG
update_pathway_xml_ls	update_pathway_xml_ls
up_level_KO	up_level_KO
