Tumour Feature Models from Pathology Representations

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Documentation for package ‘PathoFMPred’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

available_foundation_models	List locally available foundation-model representations
available_pathofm_models	List available cancer-specific models
available_titan_models	List available cancer-specific models
compare_pathofm_models	Compare representation-specific models for one cancer-endpoint task
create_pathofmpred_object	Build a portable PathoFMPred model collection
example_pathofm_features	Construct a synthetic feature vector for examples and smoke tests
example_titan_features	Construct a synthetic feature vector for examples and smoke tests
fetch_pathofmpred_models	Download user-authorized PathoFMPred model collections
pathofmpred_control	Define model-development settings
pathofm_model_registry	Read registries from locally available model collections
pathofm_sample_report	Create a single-sample pathology-foundation-model research output
plot_pathofm_binary	Plot PathoFMPred binary outputs
plot_pathofm_radar	Radar plot of PathoFMPred continuous outputs
plot_titan_binary	Plot binary PLS-LDA outputs
plot_titan_radar	Radar plot of continuous prediction percentiles
predict_pathofm	Apply supported models for one pathology foundation-model representation
predict_pathofmpred_object	Apply a user-created PathoFMPred object
predict_titan	Apply the legacy TITAN model interface
titan_model_registry	Read registries from locally available model collections
titan_sample_report	Create a single-sample pathology-foundation-model research output
validate_pathofmpred_object	Validate a PathoFMPred model collection