Package: mecoturn
Type: Package
Title: Decipher Microbial Turnover along a Gradient
Version: 0.2.0
Authors@R: c(person("Chi", "Liu", role = c("aut", "cre"), email = "liuchi0426@126.com"),
              person("Xiangzhen", "Li", role = "ctb", email = "lixz@cib.ac.cn"),
              person("Minjie", "Yao", role = "ctb", email = "yaomj@fafu.edu.cn")
			  )
Author: Chi Liu [aut, cre],
  Xiangzhen Li [ctb],
  Minjie Yao [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Description: Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.
URL: https://github.com/ChiLiubio/mecoturn
Depends: R (>= 3.5.0)
Imports: R6, ggplot2 (>= 3.4.0), microeco (>= 0.19.0), magrittr, ggpubr
Suggests: ape, GUniFrac, agricolae, lmerTest, betareg, glmmTMB
License: GPL-3
LazyData: true
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-06-01 04:41:36 UTC; Chi
Repository: CRAN
Date/Publication: 2023-06-01 05:10:02 UTC
RoxygenNote: 7.2.3
Built: R 4.2.0; ; 2023-06-01 12:08:19 UTC; unix
