# Personalized Network-Based Anti-Cancer Therapy Evaluation

## Documentation for package ‘PANACEA’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add_drugs_as_nodes | Add Drugs as Nodes
adj_list2mat | Turn Adjacency List into Adjacency Matrix
convert2alias | Convert Input Gene Symbols to Alias
DGIdb_interactions_df | DGIdb Interactions Expert-curated Sources
example_driveR_res | Example driveR Result
example_scores_dist | Example PANACEA "distance-based" Method Result
example_scores_RWR | Example PANACEA "RWR" Method Result
Laplacian.norm | Graph Laplacian Normalization
network_propagation | Network Propagation (Random-walk with Restart)
PANACEA | PANACEA: Personalized Network-based Anti-Cancer Therapy Evaluation
process_drug_target_interactions | Process Drug-Target Interactions
score_drugs | Scoring of Drugs via Network-based Methods
score_drugs_distance_based | Distance-based Scoring of Drugs
score_drugs_RWR_based | RWR-based Scoring of Drugs
STRING_adj_df | Adjacency List for STRING v11.5 - High Confidence Interactions
toy_W_mat | Toy Adjacency Matrix (for examples)