# A Bayesian Tool for Fast and Flexible Estimation of the Reproduction Number

## Documentation for package ‘EpiLPS’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

epicurve | Plot the epidemic curve
episim | Simulation of an incidence time series
estimR | Estimation of the reproduction number with Laplacian-P-splines
estimRmcmc | Estimation of the reproduction number with Laplacian-P-splines via MCMC
Idist | Density function and discrete distribution for a disease interval
influenza2009 | Data on the 2009 pandemic influenza in Pennsylvania
perfRestim | Routine to measure the performance of estimR and estimRmcmc
plot.Idist | Plot the interval distribution from an Idist object
plot.Rt | Plot the estimated reproduction number
Rmodelpriors | Prior specification for model hyperparameters
sars2003 | Daily incidence of the 2003 SARS epidemic in Hong Kong
summary.Rt | Summarize the estimated reproduction number
zika2015 | Data on the 2015 Zika virus disease in Colombia