# Biologically Explainable Machine Learning Framework

## Documentation for package ‘BioM2’ version 1.0.1

- DESCRIPTION file.
- Package NEWS.

## Help Pages

AddUnmapped | Add unmapped probe
baseModel | Prediction by Machine Learning
BioM2 | Biologically Explainable Machine Learning Framework
FindParaModule | Find suitable parameters for partitioning pathways modules
GO2ALLEGS_BP | An example about pathlistDB
GO_Ancestor | Pathways in the GO database and their Ancestor
GO_Ancestor_exact | Pathways in the GO database and their Ancestor
MethylAnno | An example about FeatureAnno
MethylData_Test | An example about TrainData/TestData
PathwaysModule | Delineate differential pathway modules with high biological interpretability
ShowModule | Display biological information within each pathway module
Stage1_FeartureSelection | Stage 1 Fearture Selection
Stage2_FeartureSelection | Stage 2 Fearture Selection
VisMulti | Visualization of the results of functions in the BioM2 package