Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and
Other Metrics)
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Documentation for package ‘iMRMC’ version 2.1.0
Help Pages
| convertDFtoDesignMatrix | Convert an MRMC data frame to a design matrix |
| convertDFtoScoreMatrix | Convert an MRMC data frame to a score matrix |
| createGroups | Assign a group label to items in a vector |
| createIMRMCdf | Convert a data frame with all needed factors to doIMRMC formatted data frame |
| deleteCol | Delete a data frame column |
| dfMRMC_example | Example of iMRMC formatted data frame |
| doAUCmrmc | MRMC analysis for arbitrary design dataset |
| doIMRMC | MRMC analysis for arbitrary design dataset |
| doIMRMC_java | MRMC analysis of the area under the ROC curve |
| doROCavg | Empirically average over multiple empirical ROC curves |
| doROCcurveMRMC | Create a standard set of ROC curves from an MRMC data frame |
| doROCxy | Create empirical ROC curve |
| doROCxyMRMC | Create empirical ROC curve from an MRMC formatted data frame |
| extractPairedComparisonsBRBM | Extract between-reader between-modality pairs of scores |
| extractPairedComparisonsWRBM | Extract within-reader between-modality pairs of scores |
| getBRBM | Get between-reader, between-modality paired data from an MRMC data frame |
| getMRMCdataset | Import MRMC dataset from the web (https://github.com/DIDSR/iMRMC/wiki/iMRMC-Datasets) |
| getMRMCscore | Get a score from an MRMC data frame |
| getWRBM | Get within-reader, between-modality paired data from an MRMC data frame |
| init.lecuyerRNG | Initialize the l'Ecuyer random number generator |
| laBRBM | MRMC Analysis of Limits of Agreement using ANOVA |
| laBRWM | MRMC Analysis of Limits of Agreement using ANOVA |
| laWRBM | MRMC Analysis of Limits of Agreement using ANOVA |
| laWRWM | MRMC Analysis of Limits of Agreement using ANOVA |
| limitsOfAgreement | MRMC Analysis of Limits of Agreement using ANOVA |
| renameCol | Rename a data frame column name or a list object name |
| roc2binary | Convert ROC data formatted for doIMRMC to TPF and FPF data formatted for doIMRMC |
| roeMetzConfigs | roeMetzConfigs |
| sim.gRoeMetz | Simulate an MRMC data set of an ROC experiment comparing two modalities |
| sim.gRoeMetz.config | Create a configuration object for the sim.gRoeMetz program |
| sim.NormalIG.Hierarchical | Simulate an MRMC data set comparing two modalities by a hierarchical model |
| sim.NormalIG.Hierarchical.config | Create a configuration object for the sim.NormalIG.Hierarchical function |
| simMRMC | Simulate an MRMC data set |
| simRoeMetz.example | Simulates a sample MRMC ROC experiment |
| successDFtoROCdf | Convert an MRMC data frame of successes to one formatted for doIMRMC |
| undoIMRMCdf | Convert a doIMRMC formatted data frame to a standard data frame with all factors. |
| uStat11 | Analysis of U-statistics degree 1,1 |
| uStat11.conditionalD | Analysis of U-statistics degree 1,1 |
| uStat11.diff | Create the kernel and design matrices for uStat11 |
| uStat11.identity | Create the kernel and design matrices for uStat11 |
| uStat11.jointD | Analysis of U-statistics degree 1,1 |