Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction


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Documentation for package ‘ProFAST’ version 1.3

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AddParSettingFAST Add FAST model settings for a PRECASTObj object
FAST Run FAST model for a PRECASTObj object
FAST_run (Varitional) ICM-EM algorithm for implementing FAST model
FAST_structure (Varitional) ICM-EM algorithm for implementing FAST model with structurized parameters
get_r2_mcfadden Calcuate the the adjusted McFadden's pseudo R-square
IntegrateSRTData Integrate multiple SRT data into a Seurat object
iscmeb_run Fit an iSC-MEB model using specified multi-section embeddings
model_set_FAST Set parameters for FAST model
RunHarmonyLouvain Embedding alignment and clustering based on the embeddings from ProFAST
RuniSCMEB Fit an iSC-MEB model using the embeddings from ProFAST
SelectHKgenes Select housekeeping genes
transferGeneNames Transfer gene names from one fortmat to the other format