AddParSettingFAST |
Add FAST model settings for a PRECASTObj object |
FAST |
Run FAST model for a PRECASTObj object |
FAST_run |
(Varitional) ICM-EM algorithm for implementing FAST model |
FAST_structure |
(Varitional) ICM-EM algorithm for implementing FAST model with structurized parameters |
get_r2_mcfadden |
Calcuate the the adjusted McFadden's pseudo R-square |
IntegrateSRTData |
Integrate multiple SRT data into a Seurat object |
iscmeb_run |
Fit an iSC-MEB model using specified multi-section embeddings |
model_set_FAST |
Set parameters for FAST model |
RunHarmonyLouvain |
Embedding alignment and clustering based on the embeddings from ProFAST |
RuniSCMEB |
Fit an iSC-MEB model using the embeddings from ProFAST |
SelectHKgenes |
Select housekeeping genes |
transferGeneNames |
Transfer gene names from one fortmat to the other format |