Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction

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Documentation for package ‘ProFAST’ version 1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

AddParSettingFAST	Add FAST model settings for a PRECASTObj object
FAST	Run FAST model for a PRECASTObj object
FAST_run	(Varitional) ICM-EM algorithm for implementing FAST model
FAST_structure	(Varitional) ICM-EM algorithm for implementing FAST model with structurized parameters
get_r2_mcfadden	Calcuate the the adjusted McFadden's pseudo R-square
IntegrateSRTData	Integrate multiple SRT data into a Seurat object
iscmeb_run	Fit an iSC-MEB model using specified multi-section embeddings
model_set_FAST	Set parameters for FAST model
RunHarmonyLouvain	Embedding alignment and clustering based on the embeddings from ProFAST
RuniSCMEB	Fit an iSC-MEB model using the embeddings from ProFAST
SelectHKgenes	Select housekeeping genes
transferGeneNames	Transfer gene names from one fortmat to the other format