Tools for Accessing the Botanical Information and Ecology
Network Database
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Documentation for package ‘BIEN’ version 1.2.7
Help Pages
| BIEN-package | BIEN: Tools for accessing the BIEN database. |
| BIEN | BIEN: Tools for accessing the BIEN database. |
| BIEN_list_all | Extract a list of all species in the BIEN database. |
| BIEN_list_country | Extract species list by country |
| BIEN_list_county | Extract a species list by county. |
| BIEN_list_sf | Extract a list of species within a given sf polygon. |
| BIEN_list_state | Extract a species list by state/province |
| BIEN_metadata_citation | Generate citations for data extracted from BIEN. |
| BIEN_metadata_database_version | Download the current BIEN database version and release date |
| BIEN_metadata_list_political_names | List political divisions and associated geonames codes. |
| BIEN_metadata_match_data | Check for differing records between old and new dataframes. |
| BIEN_occurrence_box | Extract species occurrence records by a latitude/longitude bounding box. |
| BIEN_occurrence_country | Extract species occurrence records by country. |
| BIEN_occurrence_county | Extract species occurrence records by county. |
| BIEN_occurrence_family | Extract species occurrences by family. |
| BIEN_occurrence_genus | Extract occurrence data from BIEN for specified genera |
| BIEN_occurrence_records_per_species | Count the number of (geoValid) occurrence records for each species in BIEN |
| BIEN_occurrence_sf | Extract occurrence data for specified sf polygon |
| BIEN_occurrence_species | Extract occurrence data for specified species from BIEN |
| BIEN_occurrence_state | Extract species occurrence records by state. |
| BIEN_phylogeny_complete | Download the complete BIEN phylogenies |
| BIEN_phylogeny_conservative | Download the conservative BIEN phylogeny |
| BIEN_phylogeny_label_nodes | Label nodes on a phylogeny |
| BIEN_plot_country | Download plot data from specified countries. |
| BIEN_plot_dataset | Download plot data by dataset. |
| BIEN_plot_datasource | Download plot data from a given datasource. |
| BIEN_plot_list_datasource | List available datasources. |
| BIEN_plot_list_sampling_protocols | List available sampling protocols. |
| BIEN_plot_metadata | Download plot metadata |
| BIEN_plot_name | Download plot data by plot name. |
| BIEN_plot_sampling_protocol | Download plot data using a specified sampling protocol. |
| BIEN_plot_sf | Download plot data from specified sf object. |
| BIEN_plot_state | Download plot data from specified states/provinces. |
| BIEN_ranges_box | Download range maps that intersect a specified bounding box. |
| BIEN_ranges_genus | Download range maps for given genus. |
| BIEN_ranges_intersect_species | Download range maps that intersect the range of a given species. |
| BIEN_ranges_list | List available range maps |
| BIEN_ranges_load_species | Load range maps for specified species. |
| BIEN_ranges_sf | Download range maps that intersect a user-supplied sf object. |
| BIEN_ranges_shapefile_to_skinny | Extract range data and convert to smaller "skinny" format |
| BIEN_ranges_skinny_ranges_to_richness_raster | Build a richness raster from a skinny range file |
| BIEN_ranges_species | Download range maps for given species. |
| BIEN_ranges_species_bulk | Extract range data for large numbers of species |
| BIEN_stem_datasource | Extract stem data for a given datasource from BIEN |
| BIEN_stem_family | Extract stem data for specified families from BIEN |
| BIEN_stem_genus | Extract stem data for specified genera from BIEN |
| BIEN_stem_sampling_protocol | Download stem data using a specified sampling protocol. |
| BIEN_stem_species | Extract stem data for specified species from BIEN |
| BIEN_taxonomy_family | Extract taxonomic information for families |
| BIEN_taxonomy_genus | Extract taxonomic information for genera |
| BIEN_taxonomy_species | Extract taxonomic information for species |
| BIEN_trait_country | Download trait data for given country. |
| BIEN_trait_family | Download trait data for given families. |
| BIEN_trait_genus | Download trait data for given genera. |
| BIEN_trait_list | List all available types of trait data |
| BIEN_trait_mean | Calculates species mean values for a given trait, using Genus or Family level data where Species level data is lacking. |
| BIEN_trait_species | Download trait data for given species. |
| BIEN_trait_trait | Download all measurements of a specific trait(s). |
| BIEN_trait_traitbyfamily | Download trait data for given families and traits. |
| BIEN_trait_traitbygenus | Download trait data for given genus/genera and trait(s). |
| BIEN_trait_traitbyspecies | Download trait data for given species and trait. |
| BIEN_trait_traits_per_species | Count the number of trait observations for each species in the BIEN database |